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Center of Functionally Integrative Neuroscience

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Larsen, N. Y., Paulsen, L. B., Ahrends, C., Winkler, A. M. & Vidaurre, D. (2026). A comprehensive framework for statistical testing of brain dynamics. Nature Protocols. Advance online publication. https://doi.org/10.1038/s41596-025-01300-2

Burta, O., Akbarian, F., Rossi, C., Vidaurre, D., D'hooghe, M. B., D'Haeseleer, M., Nagels, G. & Van Schependom, J. (2026). Temporally Defined Brain Network Activation Associated With Slowed Information Processing Speed in Multiple Sclerosis. Human Brain Mapping, 47(3), Article e70478. https://doi.org/10.1002/hbm.70478

Oyarzo, P., Cichy, R. M. & Vidaurre, D. (2025). ADA: A decoding algorithm for temporally-variable brain responses. Computational and Structural Biotechnology Journal, 27, 4943-4951. https://doi.org/10.1016/j.csbj.2025.10.044

Alonso, S., Llera, A. & Vidaurre, D. (2025). Can fMRI functional connectivity index dynamic neural communication and cognition? Biological Psychology, 199, Article 109074. https://doi.org/10.1016/j.biopsycho.2025.109074

Rai, L. A., Lee, H., Becke, E., Trenado, C., Abad-Hernando, S., Sperling, M., Vidaurre, D., Wald-Fuhrmann, M., Richardson, D. C., Ward, J. A. & Orgs, G. (2025). Delta-band audience brain synchrony tracks engagement with live and recorded dance. iScience, 28(7), Article 112922. https://doi.org/10.1016/j.isci.2025.112922

Dirren, E., Klug, J., Jarne, C., Vidaurre, D. & Carrera, E. (2025). Determinants of brain network resilience after stroke. Brain Communications, 7(3), Article fcaf218. https://doi.org/10.1093/braincomms/fcaf218

Ahrends, C. & Vidaurre, D. (2025). Dynamic Functional Connectivity. In Neuromethods (pp. 333-375). The Humana Press Inc.. https://doi.org/10.1007/978-1-0716-4438-6_11

van Es, M. W. J., Higgins, C., Gohil, C., Quinn, A. J., Vidaurre Henche, D. & Woolrich, M. (2025). Large-scale cortical functional networks are organized in structured cycles. Nature Neuroscience, 28(10), 2118–2128. https://doi.org/10.1038/s41593-025-02052-8

Ahrends, C., Woolrich, M. W. & Vidaurre, D. (2025). Predicting individual traits from models of brain dynamics accurately and reliably using the Fisher kernel. eLife, 13, Article RP95125. https://doi.org/10.7554/eLife.95125

Ahrends, C., Lumaca, M., Kringelbach, M. L., Vidaurre, D. & Vuust, P. (2025). Prediction of Individual Melodic Contour Processing in Sensory Association Cortices From Resting State Functional Connectivity. Human Brain Mapping, 46(17), Article e70409. https://doi.org/10.1002/hbm.70409

Jespersen, K. V., Stevner, A., Kringelbach, M., Van Someren, E., Vidaurre, D. & Vuust, P. (2025). Reduced switching between brain states in insomnia: evidence from modeling of fMRI brain dynamics. Cerebral Cortex, 35(11), Article bhaf314. https://doi.org/10.1093/cercor/bhaf314

Sharma, A., Lange, J., Vidaurre, D. & Florin, E. (2025). Spontaneous network transitions predict somatosensory perception. Cerebral Cortex, 35(11), Article bhaf309. https://doi.org/10.1093/cercor/bhaf309

Alonso, S., Cocchi, L., Hearne, L. J., Shine, J. M. & Vidaurre, D. (2025). Targeted Time-Varying Functional Connectivity. Human Brain Mapping, 46(4), Article e70157. https://doi.org/10.1002/hbm.70157

Vidaurre, D., Masaracchia, L., Larsen, N. Y., Ruijters, L. R. P. T., Alonso, S., Ahrends, C. & Woolrich, M. W. (2025). The Gaussian-linear hidden Markov model: A Python package. Imaging Neuroscience, 3, Article imag_a_00460. https://doi.org/10.1162/imag_a_00460

Rossi, C., Vidaurre, D., Costers, L., D’hooghe, M. B., Akbarian, F., D’haeseleer, M., Woolrich, M., Nagels, G. & Van Schependom, J. (2024). Disrupted working memory event-related network dynamics in multiple sclerosis. Communications Biology, 7(1), Article 1592. https://doi.org/10.1038/s42003-024-07283-2

Gohil, C., Huang, R., Roberts, E., van Es, M. W. J., Quinn, A. J., Vidaurre, D. & Woolrich, M. W. (2024). osl-dynamics, a toolbox for modeling fast dynamic brain activity. eLife, 12, Article RP91949. https://doi.org/10.7554/eLife.91949

Rossi, C., Vidaurre, D., Costers, L., Akbarian, F., Woolrich, M., Nagels, G. & Van Schependom, J. (2023). A data-driven network decomposition of the temporal, spatial, and spectral dynamics underpinning visual-verbal working memory processes. Communications Biology, 6(1), Article 1079. https://doi.org/10.1038/s42003-023-05448-z

Masaracchia, L., Fredes, F., Woolrich, M. W. & Vidaurre, D. (2023). Dissecting unsupervised learning through hidden Markov modeling in electrophysiological data. Journal of Neurophysiology, 130(2), 364-379. https://doi.org/10.1152/jn.00054.2023

Ahrends, C. & Vidaurre Henche, D. (2023). Dynamic Functional Connectivity. ArXiv. https://doi.org/10.48550/arXiv.2301.03408

Ahrends, C. & Vidaurre Henche, D. (2023). Predicting individual traits from models of brain dynamics accurately and reliably using the Fisher kernel. bioRxiv. https://doi.org/10.1101/2023.03.02.530638

Khawaldeh, S., Tinkhauser, G., Torrecillos, F., He, S., Foltynie, T., Limousin, P., Zrinzo, L., Oswal, A., Quinn, A. J., Vidaurre, D., Tan, H., Litvak, V., Kühn, A., Woolrich, M. & Brown, P. (2022). Balance between competing spectral states in subthalamic nucleus is linked to motor impairment in Parkinson's disease. Brain, 145(1), 237-250. https://doi.org/10.1093/brain/awab264

Ahrends, C., Stevner, A., Pervaiz, U., Kringelbach, M. L., Vuust, P., Woolrich, M. W. & Vidaurre, D. (2022). Data and model considerations for estimating time-varying functional connectivity in fMRI. NeuroImage, 252, Article 119026. https://doi.org/10.1016/j.neuroimage.2022.119026

Pervaiz, U., Vidaurre, D., Gohil, C., Smith, S. M. & Woolrich, M. W. (2022). Multi-dynamic modelling reveals strongly time-varying resting fMRI correlations. Medical Image Analysis, 77, Article 102366. https://doi.org/10.1016/j.media.2022.102366

Higgins, C., Vidaurre, D., Kolling, N., Liu, Y., Behrens, T. & Woolrich, M. (2022). Spatiotemporally resolved multivariate pattern analysis for M/EEG. Human Brain Mapping, 43(10), 3062-3085. https://doi.org/10.1002/hbm.25835

Higgins, C., van Es, M. W. J., Quinn, A. J., Vidaurre, D. & Woolrich, M. W. (2022). The relationship between frequency content and representational dynamics in the decoding of neurophysiological data. NeuroImage, 260, Article 119462. https://doi.org/10.1016/j.neuroimage.2022.119462

Vidaurre, D. (2021). A new model for simultaneous dimensionality reduction and time-varying functional connectivity estimation. PLoS Computational Biology, 17(4), Article e1008580. https://doi.org/10.1371/journal.pcbi.1008580

Vidaurre, D., Llera, A., Smith, S. M. & Woolrich, M. W. (2021). Behavioural relevance of spontaneous, transient brain network interactions in fMRI. NeuroImage, 229, Article 117713. https://doi.org/10.1016/j.neuroimage.2020.117713

Mosam, F., Vidaurre, D. & De Giuli, E. (2021). Breakdown of random matrix universality in Markov models. Physical Review E, 104(2), Article 024305. https://doi.org/10.1103/PhysRevE.104.024305

Sharma, A., Vidaurre, D., Vesper, J., Schnitzler, A. & Florin, E. (2021). Differential dopaminergic modulation of spontaneous cortico–subthalamic activity in parkinson’s disease. eLife, 10, Article e66057. https://doi.org/10.7554/eLife.66057

Vidaurre, D., Cichy, R. M. & Woolrich, M. W. (2021). Dissociable Components of Information Encoding in Human Perception. Cerebral cortex (New York, N.Y. : 1991), 31(12), 5664-5675. https://doi.org/10.1093/cercor/bhab189

Salvan, P., Lazari, A., Vidaurre, D., Mandino, F., Johansen-Berg, H. & Grandjean, J. (2021). Frequency modulation of entorhinal cortex neuronal activity drives distinct frequency-dependent states of brain-wide dynamics. Cell Reports, 37(5), Article 109954. https://doi.org/10.1016/j.celrep.2021.109954

Van Schependom, J., Vidaurre, D., Costers, L., Sjøgård, M., Sima, D. M., Smeets, D., D'hooghe, M. B., D'haeseleer, M., Deco, G., Wens, V., De Tiège, X., Goldman, S., Woolrich, M. & Nagels, G. (2021). Increased brain atrophy and lesion load is associated with stronger lower alpha MEG power in multiple sclerosis patients. NeuroImage: Clinical, 30, Article 102632. https://doi.org/10.1016/j.nicl.2021.102632

Higgins, C., Liu, Y., Vidaurre, D., Kurth-Nelson, Z., Dolan, R., Behrens, T. & Woolrich, M. (2021). Replay bursts in humans coincide with activation of the default mode and parietal alpha networks. Neuron, 109(5), 882-893.e7. https://doi.org/10.1016/j.neuron.2020.12.007

Deco, G., Vidaurre Henche, D. & Kringelbach, M. L. (2021). Revisiting the global workspace orchestrating the hierarchical organization of the human brain. Nature Human Behaviour, 5(4), 497-511. https://doi.org/10.1038/s41562-020-01003-6

Dijkstra, N., Ambrogioni, L., Vidaurre, D. & van Gerven, M. (2020). Neural dynamics of perceptual inference and its reversal during imagery. eLife, 9, 1-19. Article e53588. https://doi.org/10.7554/eLife.53588

Pervaiz, U., Vidaurre, D., Woolrich, M. W. & Smith, S. M. (2020). Optimising network modelling methods for fMRI. NeuroImage, 211, Article 116604. https://doi.org/10.1016/j.neuroimage.2020.116604

Karapanagiotidis, T., Vidaurre, D., Quinn, A. J., Vatansever, D., Poerio, G. L., Turnbull, A., Ho, N. S. P., Leech, R., Bernhardt, B. C., Jefferies, E., Margulies, D. S., Nichols, T. E., Woolrich, M. W. & Smallwood, J. (2020). The psychological correlates of distinct neural states occurring during wakeful rest. Scientific Reports, 10(1), Article 21121. https://doi.org/10.1038/s41598-020-77336-z

B, H., MW, W., AJ, Q., D, V. & M, D. V. (2019). A dynamic system of brain networks revealed by fast transient EEG fluctuations and their fMRI correlates. NeuroImage, 185, 72-82. https://doi.org/10.1016/j.neuroimage.2018.09.082

Schependom, J. V., Vidaurre, D., Costers, L., Sjøgård, M., Dtextquotesinglehooghe, M. B., Dtextquotesinglehaeseleer, M., Wens, V., Tiège, X. D., Goldman, S., Woolrich, M. & Nagels, G. (2019). Altered transient brain dynamics in multiple sclerosis: Treatment or pathology? Human Brain Mapping, 40(16), 4789-4800. https://doi.org/10.1002/hbm.24737

Vidaurre, D., Arenas, A. L., Smith, S. M. & Woolrich, M. W. (2019). Behavioural relevance of spontaneous, transient brain network interactions in fMRI. bioRxiv. https://doi.org/10.1101/779736

Stevner, A. B. A., Vidaurre, D., Cabral, J., Rapuano, K., Nielsen, S. F. V., Tagliazucchi, E., Laufs, H., Vuust, P., Deco, G., Woolrich, M. W., Van Someren, E. & Kringelbach, M. L. (2019). Discovery of key whole-brain transitions and dynamics during human wakefulness and non-REM sleep. Nature Communications, 10(1), Article 1035. https://doi.org/10.1038/s41467-019-08934-3

J, H., S, B., A, S., M, W., D, V. & E, F. (2019). Spontaneous network activity accounts for variability in stimulus-induced gamma responses. bioRxiv. https://doi.org/10.1101/381236

Vidaurre, D., Woolrich, M. W., Winkler, A. M., Karapanagiotidis, T., Smallwood, J. & Nichols, T. E. (2019). Stable between-subject statistical inference from unstable within-subject functional connectivity estimates. Human Brain Mapping, 40(4), 1234-1243. https://doi.org/10.1002/hbm.24442

Quinn, A. J., Ede, F. V., Brookes, M. J., Heideman, S. G., Nowak, M., Seedat, Z. A., Vidaurre, D., Zich, C., Nobre, A. C. & Woolrich, M. W. (2019). Unpacking Transient Event Dynamics in Electrophysiological Power Spectra. Brain Topography, 32(6), 1020-1034. https://doi.org/10.1007/s10548-019-00745-5

D, V., R, A., R, B., AJ, Q., F, A.-A., SM, S. & MW, W. (2018). Discovering dynamic brain networks from big data in rest and task. NeuroImage, 180(B), 646-656. https://doi.org/10.1016/j.neuroimage.2017.06.077

GC, ON., P, T., D, V., L, L., MW, W. & MJ, B. (2018). Dynamics of large-scale electrophysiological networks: A technical review. NeuroImage, 180(B), 559-576. https://doi.org/10.1016/j.neuroimage.2017.10.003

Alfaro-Almagro, F., Jenkinson, M., Bangerter, N. K., Andersson, J. L. R., Griffanti, L., Douaud, G., Sotiropoulos, S. N., Jbabdi, S., Hernandez-Fernandez, M., Vallee, E., Vidaurre, D., Webster, M., McCarthy, P., Rorden, C., Daducci, A., Alexander, D. C., Zhang, H., Dragonu, I., Matthews, P. M. ... Smith, S. M. (2018). Image processing and Quality Control for the first 10,000 brain imaging datasets from UK Biobank. NeuroImage, 166, 400-424. https://doi.org/10.1016/j.neuroimage.2017.10.034

C, Z., MW, W., R, B., D, V., J, S., EL, H., L, J., S, B., AJ, Q. & CJ, S. (2018). Motor learning shapes temporal activity in human sensorimotor cortex. bioRxiv. https://doi.org/10.1101/345421

D, V., LT, H., AJ, Q., BAE, H., MJ, B., AC, N. & MW, W. (2018). Spontaneous cortical activity transiently organises into frequency specific phase-coupling networks. Nature Communications, 9(1), Article 2987. https://doi.org/10.1038/s41467-018-05316-z

D, V., MW, W., AM, W., T, K., J, S. & TE, N. (2018). Stable between-subject statistical inference from unstable within-subject functional connectivity estimates. bioRxiv. https://doi.org/10.1101/268151

AJ, Q., D, V., R, A., R, B., AC, N. & MW, W. (2018). Task-Evoked Dynamic Network Analysis Through Hidden Markov Modeling. Frontiers in Neuroscience, 12(AUG), Article 603. https://doi.org/10.3389/fnins.2018.00603

P, S., T, A., D, V., JD, T., S, F., A, C., SJ, C. & AD, E. (2018). The network properties of the brain at the time of normal birth support the acquisition of language processing. bioRxiv. https://doi.org/10.1101/282673

R, B., D, V., AJ, Q., R, A., O, P. J., S, J. & M, W. (2018). Transient spectral events in resting state MEG predict individual time-frequency task responses. bioRxiv. https://doi.org/10.1101/419374

IC, M., DM, F., WC, K., D, V., L, T., J, H.-L., MA, G., DA, L. & JA, B. (2018). Transient visual pathway critical for normal development of primate grasping behavior. Proceedings of the National Academy of Sciences (PNAS), 115(6), 1364-1369. https://doi.org/10.1073/pnas.1717016115

D, V., SM, S. & MW, W. (2017). Brain network dynamics are hierarchically organized in time. Proceedings of the National Academy of Sciences (PNAS), 114(48), 12827-12832. https://doi.org/10.1073/pnas.1705120114

Cabral, J., Vidaurre, D., Marques, P., Magalhães, R., Silva Moreira, P., Miguel Soares, J., Deco, G., Sousa, N. & Kringelbach, M. L. (2017). Cognitive performance in healthy older adults relates to spontaneous switching between states of functional connectivity during rest. Scientific Reports, 7(1), 5135. Article 5135. https://doi.org/10.1038/s41598-017-05425-7

F, A.-A., M, J., NK, B., JLR, A., L, G., G, D., S, S., S, J., M, H.-F., E, V., SM, S. & Vidaurre Henche, D. (2017). Image Processing and Quality Control for the first 10,000 Brain Imaging Datasets from UK Biobank. bioRxiv. https://doi.org/10.1101/130385

Vidaurre, D., Hunt, L. T., Quinn, A. J., Hunt, B. A. E., Brookes, M. J., Nobre, A. C. & Woolrich, M. W. (2017). Spontaneous cortical activity transiently organises into frequency specific phase-coupling networks. bioRxiv. https://doi.org/10.1101/150607

Vidaurre, D., Quinn, A. J., Baker, A. P., Dupret, D., Tejero-Cantero, A. & Woolrich, M. W. (2016). Spectrally resolved fast transient brain states in electrophysiological data. NeuroImage, 126, 81-95. https://doi.org/10.1016/j.neuroimage.2015.11.047

Smith, S. M., Nichols, T. E., Vidaurre, D., Winkler, A. M., Behrens, T. E. J., Glasser, M. F., Ugurbil, K., Barch, D. M., Van Essen, D. C. & Miller, K. L. (2015). A positive-negative mode of population covariation links brain connectivity, demographics and behavior. Nature Neuroscience, 18(11), 1565-1567. https://doi.org/10.1038/nn.4125

Winkler, A. M., Webster, M. A., Vidaurre, D., Nichols, T. E. & Smith, S. M. (2015). Multi-level block permutation. NeuroImage, 123, 253-268. https://doi.org/10.1016/j.neuroimage.2015.05.092

Pineda-Pardo, J. A., Bruña, R., Woolrich, M., Marcos, A., Nobre, A. C., Maestú, F. & Vidaurre, D. (2014). Guiding functional connectivity estimation by structural connectivity in MEG: An application to discrimination of conditions of mild cognitive impairment. NeuroImage, 101, 765-777. https://doi.org/10.1016/j.neuroimage.2014.08.002

Vidaurre, D., Van Gerven, M. A. J., Bielza, C., Larrañaga, P. & Heskes, T. (2013). Bayesian sparse partial least squares. Neural Computation, 25(12), 3318-3339. https://doi.org/10.1162/NECO_a_00524

Smith, S. M., Vidaurre, D., Beckmann, C. F., Glasser, M. F., Jenkinson, M., Miller, K. L., Nichols, T. E., Robinson, E. C., Salimi-Khorshidi, G., Woolrich, M. W., Barch, D. M., Uǧurbil, K. & Van Essen, D. C. (2013). Functional connectomics from resting-state fMRI. Trends in Cognitive Sciences, 17(12), 666-682. https://doi.org/10.1016/j.tics.2013.09.016

Vidaurre, D., Rodríguez, E. E., Bielza, C., Larrañaga, P. & Rudomin, P. (2012). A new feature extraction method for signal classification applied to cord dorsum potential detection. Journal of Neural Engineering, 9(5), Article 056009. https://doi.org/10.1088/1741-2560/9/5/056009

Vidaurre, D., Bielza, C. & Larrañaga, P. (2011). On nonlinearity in neural encoding models applied to the primary visual cortex. Network: Computation in Neural Systems, 22(1-4), 97-125. https://doi.org/10.3109/0954898X.2011.637606

Vidaurre, D., Bielza, C. & Larrañaga, P. (2010). Learning an L1-regularized Gaussian Bayesian network in the equivalence class space. IEEE Transactions on Cybernetics, 40(5), 1231-1242. Article 5382574. https://doi.org/10.1109/TSMCB.2009.2036593

Vidaurre, D. & Muruzábal, J. (2007). A quick assessment of topology preservation for SOM structures. IEEE Transactions on Neural Networks, 18(5), 1524-1528. https://doi.org/10.1109/TNN.2007.895820

Revised 22.09.2025

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Henriette Blæsild Vuust