Publications

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Jespersen, S. N. & Blumen, A. (2000). Small-world networks: Links with long-tailed distributions. Physical Review E, 62(5), 6270-6274.

Hansen, B., Khan, A. R., Shemesh, N., Lund, T. E., Sangill, R., Østergaard, L. & Jespersen, S. N. (2017). White Matter Biomarkers from Fast Protocols Using Axially Symmetric Diffusion Kurtosis Imaging. In Proceedings of ISMRM 25th Annual Meeting (pp. 1742)

Hansen, B., Khan, A. R., Shemesh, N., Lund, T. E., Sangill, R., Eskildsen, S. F., Østergaard, L. & Jespersen, S. N. (2017). White matter biomarkers from fast protocols using axially symmetric diffusion kurtosis imaging. NMR in Biomedicine, 30(9), Article e3741. https://doi.org/10.1002/nbm.3741

Hansen, B., Khan, A. R., Shemesh, N., Lund, T. E., Sangill, R., Østergaard, L. & Jespersen, S. N. (2016). White matter biomarkers from fast protocols using axially symmetric diffusion kurtosis imaging.

Jespersen, S. (2018). White matter biomarkers from diffusion MRI. Journal of Magnetic Resonance, 291, 127-140. https://doi.org/10.1016/j.jmr.2018.03.001

Rasmussen, P. M., Madsen, K. H., Lund, T. E. & Hansen, L. K. (2010). Visualization of predictive models in neuroimaging - the sensitivity map. Poster session presented at 16th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, Spain.

Rasmussen, P. M., Madsen, K. H., Lund, T. E. & Hansen, L. K. (2010). Visualization of nonlinear kernel models in neuroimaging by sensitivity maps. NeuroImage. https://doi.org/10.1016/j.neuroimage.2010.12.035

Rasmussen, P. M., Madsen, K. H., Hansen, L. K., Lund, T. E., Schmah, T., Yourganov, G. & Strother, S. C. (2012). Visualization of nonlinear classification models in neuroimaging: Signed sensitivity maps. In BIOSIGNALS 2012 - Proceedings of the International Conference on Bio-Inspired Systems and Signal Processing (pp. 254-263)

Flint, J., Menon, K., Hansen, B., Forder, J. & Blackband, S. (2020). Visualization of Live, Mammalian Neurons During Kainate-Infusion Using Magnetic Resonance Microscopy. NeuroImage, 219, Article 116997. https://doi.org/10.1016/j.neuroimage.2020.116997

Hansen, B. & Østergaard, L. (2013). Vigtige metoder til undersøgelse af hjernen. In H. Blæsild Vuust (Ed.), Hjernen - fra celle til samfund (pp. 164-167)

Hansen, B. & Jespersen, S. N. (2007). Vandets tumlen giver viden om hjernen. Aktuel Naturvidenskab, 1, 10-13.

Hansen, B. & Jespersen, S. N. (2007). Vandets tumlen giver viden om hjernen. Aktuel Naturvidenskab, (1), 10-13.

Lundell, H., Dyrby, T., Hubbard Cristinacce, P., Zhou, F.-L., Parker, G. & Jespersen, S. N. (2015). Validation of Double Diffusion Schemes of Microscopic Fractional Anisotropy. Abstract from ISMRM 2015 23rd Annual Meeting, Toronto, Canada.

Hansen, M. B., Jespersen, S. N., Leighland, L. & Kroenke, C. (2013). Using diffusion anisotropy to characterize neuronal morphology in gray matter: the orientation distribution of axons and dendrites in the NeuroMorpho.org database. Frontiers in Integrative Neuroscience, 7.

Bjerre, T., Henriksen, J., Nielsen, C. H., Rasmussen, P. M., Hansen, L. K. & Madsen, K. H. (2009). Unified ICA-SPM analysis of FMRI Experiments :Implementation of an ICA graphical user interface for the SPM pipeline. In BIOSIGNALS 2009 - Proceedings of the 2nd International Conference on Bio-Inspired Systems and Signal Processing (pp. 316-321)

Jespersen, S. & Plischke, M. (2003). Transport properties of incipient gels. Physical Review E, 68(2), Article 21403. https://doi.org/10.1103/PhysRevE.68.021403

Engedal, T. S., Hjort, N., Hougaard, K. D., Simonsen, C. Z., Andersen, G., Mikkelsen, I. K., Boldsen, J. K., Eskildsen, S. F., Hansen, M. B., Angleys, H., Jespersen, S. N., Pedraza, S., Cho, T.-H., Serena, J., Siemonsen, S., Thomalla, G., Nighoghossian, N., Fiehler, J., Mouridsen, K. & Østergaard, L. (2018). Transit time homogenization in ischemic stroke - A novel biomarker of penumbral microvascular failure? Journal of Cerebral Blood Flow and Metabolism, 38(11), 2006-2020. https://doi.org/10.1177/0271678X17721666

Henriques, R. N., Jespersen, S., Jones, D. K. & Veraart, J. (2021). Towards more robust and reproducible Diffusion Kurtosis Imaging. 2464. Abstract from 2021 International Society for Magnetic Resonance in Medicine annual meeting.

Sandgaard, A. D., Kiselev, V. G., Shemesh, N. & Jespersen, S. (2022). Towards microstructure-informed QSM: A digital phantom study. Abstract from 2022 Joint Workshop on MR phase, magnetic susceptibility and electrical properties mapping, Lucca, Italy.

Sandgaard, A. D., Kiselev, V. G., Shemesh, N. & Jespersen, S. (2023). Towards microstructure-informed QSM: A digital phantom study. 1039. Abstract from ISMRM & ISMRT Annual Meeting & Exhibition, Toronto, Ontario, Canada.

Henriques, R. N., Jespersen, S. N., Jones, D. K. & Veraart, J. (2021). Toward more robust and reproducible diffusion kurtosis imaging. Magnetic Resonance in Medicine, 86(3), 1600-1613. https://doi.org/10.1002/mrm.28730

Sandgaard, A. D., Shemesh, N., Jespersen, S. N. & Kiselev, V. G. (2023). To mask or not to mask? Investigating the impact of accounting for spatial frequency distributions and susceptibility sources on QSM quality. Magnetic Resonance in Medicine, 90(1), 353-362. https://doi.org/10.1002/mrm.29627

Olesen, J. L., Hansen, B., Shemesh, N. & Jespersen, S. N. (2017). Time Dependence of White Matter Biomarkers from Axially Symmetric Diffusion Kurtosis Imaging. In Proceedings of ISMRM 25th Annual Meeting (pp. 0841)

Ianus, A., Jespersen, S. N., Alexander, D. C., Drobnjak, I. & Shemesh, N. (2017). Time Dependence of Microscopic Anisotropy in the Mouse Brain Measured with Double Oscillating Diffusion Encoding (DODE) MRI. In Proceedings of ISMRM 25th Annual Meeting (Vol. 25, pp. 0277)

Lynge Olesen, J., Hansen, B., Shemesh, N. & Jespersen, S. N. (2017). Time dependence of kurtosis and intra-and extra-axonal diffusivity using axisymmetric diffusion kurtosis imaging. Poster session presented at ISMRM Workshop on Quantitative MRI in White Matter Disorders: Useful, Usable, Used?, Vancouver, Canada.

Jespersen, S. N., Hansen, B., Nunes, D. & Shemesh, N. (2016). Time Dependence of Diffusion and Kurtosis Parameters in the Rat Spinal Cord. Abstract from ISMRM 2016 Annual Meeting & Exhibition, Singapore, Singapore.

Henriques, R. N., Jespersen, S. & Shemesh, N. (2019). The two-compartment diffusion “standard model” misestimates microscopic anisotropy in-vivo. Abstract from International Society of Magnetic Resonance in Medicine 2019, Montreal, Quebec, Canada.

Jespersen, S. N. & Østergaard, L. (2012). The roles of cerebral blood flow, capillary transit time heterogeneity, and oxygen tension in brain oxygenation and metabolism. Journal of Cerebral Blood Flow and Metabolism, 32(2), 264-277. https://doi.org/10.1038/jcbfm.2011.153

Gu, T., Just, J., Stenz, K. T., Yan, Y., Sieljacks, P., Wang, J., Groennebaek, T. S., Jakobsgaard, J. E., Rindom, E., Herskind, J., Gravholt, A., Lassen, T. R., Jørgensen, M., Bæk, R., Gutiérrez-Jiménez, E., Iversen, N. K., Rasmussen, P. M., Nyengaard, J. R., Jørgensen, M. M. ... Drasbek, K. R. (2022). The Role of Plasma Extracellular Vesicles in Remote Ischemic Conditioning and Exercise-Induced Ischemic Tolerance. International Journal of Molecular Sciences , 23(6), Article 3334. https://doi.org/10.3390/ijms23063334

Østergaard, L., Kristiansen, S. B., Angleys, H., Frøkiær, J., Michael Hasenkam, J., Jespersen, S. N. & Bøtker, H. E. (2014). The role of capillary transit time heterogeneity in myocardial oxygenation and ischemic heart disease. Basic Research in Cardiology, 109(3), Article 409. https://doi.org/10.1007/s00395-014-0409-x

Østergaard, L., Tietze, A., Nielsen, T., Drasbek, K. R., Mouridsen, K., Jespersen, S. N. & Horsman, M. R. (2013). The relationship between tumor blood flow, angiogenesis, tumor hypoxia, and aerobic glycolysis. Cancer Research, 73(18), 5618-5624. https://doi.org/10.1158/0008-5472.CAN-13-0964

Chuhutin, A., Khan, A. R., Hansen, B. & Jespersen, S. N. (2015). The Mean Kurtosis Evaluation Measurements Show a Considerable Disparity from the Analytically Evaluated Ones for a Clinically Used Range of B-Values. Abstract from ISMRM 2015 23rd Annual Meeting, Toronto, Canada.

Sandgaard, A. D., Shemesh, N., Østergaard, L., Kiselev, V. G. & Jespersen, S. N. (2024). The Larmor frequency shift of a white matter magnetic microstructure model with multiple sources. NMR in Biomedicine, 37(8), Article e5150. https://doi.org/10.1002/nbm.5150

Sandgaard, A. D., Kiselev, V. G., Shemesh, N. & Jespersen, S. (2022). The Larmor Frequency of a White Matter Magnetic Microstructure Model with Multiple Sources. 2458. Abstract from Joint Annual Meeting ISMRM-ESMRMB
& ISMRT 31st Annual Meeting, London, United Kingdom.

Jespersen, S., Pedersen, M. & Stødkilde-Jørgensen, H. (2005). The influence of a cellular size distribution on NMR diffusion measurements. Eur Biophys, 34, 890-898. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Citation&list_uids=15886986

Jespersen, S., Pedersen, M. & Stødkilde-Jørgensen, H. (2004). The influence of a cellular size distribution on MR diffusion measurements. Poster session presented at ESMRMB 2004, København, Denmark.

Vestergaard-Poulsen, P., Jakobsen, R., Hansen, B., Nørregaard Laursen, T. & Østergaard, L. (2004). The importance of transverse relaxation in modeling water self diffusion in brain tissue. Poster session presented at International Society of Magnetic Resonance in Medicine, Kyoto, 2004.

Chuhutin, A., Shemesh, N., Hansen, B. & Jespersen, S. N. (2016). The Importance of B-Values Selection and the Precision of Diffusion Kurtosis Estimation by the Conventional Schemes. Abstract from ISMRM 2016 Annual Meeting & Exhibition, Singapore, Singapore.

Lee, H.-H., Jespersen, S. N., Fieremans, E. & Novikov, D. S. (2020). The impact of realistic axonal shape on axon diameter estimation using diffusion MRI. NeuroImage, 223, Article 117228. https://doi.org/10.1016/j.neuroimage.2020.117228

Rasmussen, P. M., Jespersen, S. N. & Ostergaard, L. (2015). The effects of transit time heterogeneity on brain oxygenation during rest and functional activation. Journal of Cerebral Blood Flow and Metabolism, 35(3), 432-42. https://doi.org/10.1038/jcbfm.2014.213

Knopper, R. W., Stald Skoven, C., Eskildsen, S. F., Østergaard, L. & Hansen, B. (2024). The effects of locus coeruleus ablation on mouse brain volume and microstructure evaluated by high-field MRI. Frontiers in Cellular Neuroscience, 18, Article 1498133. https://doi.org/10.3389/fncel.2024.1498133

Gutiérrez-Jiménez, E., Angleys, H., Rasmussen, P. M., Mikkelsen, I. K., Mouridsen, K. & Østergaard, L. (2018). The effects of hypercapnia on cortical capillary transit time heterogeneity (CTH) in anesthetized mice. Journal of Cerebral Blood Flow and Metabolism, 38(2), 290-303. Article 271678X17692598. https://doi.org/10.1177/0271678X17692598

Angleys, H., Jespersen, S. & Østergaard, L. (2016). The effects of capillary transit time heterogeneity (CTH) on the cerebral uptake of glucose and glucose analogs: Application to FDG and comparison to oxygen uptake. Frontiers in Computational Neuroscience, 10(OCT), Article 103. https://doi.org/10.3389/fncom.2016.00103

Angleys, H., Jespersen, S. & Østergaard, L. (2018). The effects of capillary transit time heterogeneity (CTH) on the BOLD signal. Human Brain Mapping, 39(6), 2329-2352. https://doi.org/10.1002/hbm.23991

Angleys, H., Østergaard, L. & Jespersen, S. N. (2015). The effects of capillary transit time heterogeneity (CTH) on brain oxygenation. Journal of Cerebral Blood Flow and Metabolism, 35(5), 806-17. https://doi.org/10.1038/jcbfm.2014.254

Østergaard, L., Finnerup, N. B., Terkelsen, A. J., Olesen, R. A., Drasbek, K. R., Knudsen, L., Jespersen, S. N., Frystyk, J., Charles, M., Thomsen, R. W., Christiansen, J. S., Beck-Nielsen, H., Jensen, T. S. & Andersen, H. (2015). The effects of capillary dysfunction on oxygen and glucose extraction in diabetic neuropathy. Diabetologia, 58(4), 666-677. https://doi.org/10.1007/s00125-014-3461-z

Jespersen, S., Pedersen, M. & Stødkilde-Jørgensen, H. (2005). The effects of a cellular polydispersity on constant-time diffusion. Abstract from ISMRM 2005, Miami, United States.

Frøhlich, A. F., Jespersen, S. N., Østergaard, L. & Kiselev, V. G. (2008). The effect of impermeable boundaries of arbitrary geometry on the apparent diffusion coefficient. Journal of Magnetic Resonance, 194(1), 128-35. https://doi.org/10.1016/j.jmr.2008.06.009

Garza-Villarreal, E. A., Mallar, C., Hansen, B., Eskildsen, S. F., Devenyi, G. A., Castillo-Padilla, D., Balducci-Garcia, T., Reyes-Zamorano, E., Jespersen, S. N., Perez-Palacios, P., Patel, R. & Gonzalez-Olvera, J. J. (2016). The effect of crack cocaine addiction on the microstructure and morphology of the human striatum and thalamus using novel shape analysis and fast diffusion kurtosis imaging. (066647 ed.) https://doi.org/10.1101/066647

Garza-Villarreal, E. A., Chakravarty, M. M., Hansen, B., Eskildsen, S. F., Devenyi, G. A., Castillo-Padilla, D., Balducci-Garcia, T., Reyes-Zamorano, E., Jespersen, S. N., Perez-Palacios, P., Patel, R. & Gonzalez-Olvera, J. J. (2017). The effect of crack cocaine addiction and age on the microstructure and morphology of the human striatum and thalamus using shape analysis and fast diffusion kurtosis imaging. Translational Psychiatry, 7(5), Article 1122. https://doi.org/10.1038/tp.2017.92

Gutiérrez-Jiménez, E., Fruekilde, S., Rasmussen, P. M., Mikkelsen, I. K., Iversen, N. K., Bordoni, L., Fossati, S., Ramos-Cejudo, J., Sakadzic, S. & Østergaard, L. (2019). The effect of carbonic anhydrase inhibitors in brain microcirculation of the Tg-SwDI model of Alzheimer's disease. Journal of Cerebral Blood Flow and Metabolism, 39(1_suppl), Article PB02-O02. https://doi.org/10.1177/0271678X19851020

Jespersen, S. N. & Buhl, N. (2011). The displacement correlation tensor: Microstructure, ensemble anisotropy and curving fibers. Journal of Magnetic Resonance, 208(1), 34-43.

Jespersen, S. N., Leighland, L., Cornea, A. & Kroenke, C. (2009). The diffusion tensor reveals gray matter architecture. Abstract from ISMRM Annual meeting 2009, Honolulu, United States.

Leigland, L., Jespersen, S. N., Taber, E., Bock, A., Cornea, A., Olivierra, J. & Kroenke, C. (2010). The Complexity of Dendritic Arbors in the Developing Cerebral Cortex Determined by Diffusion Tensor Magnetic Resonance Imaging. Abstract from 51st Experimental Nuclear Magnetic Resonance Conference.

Østergaard, L., Aamand, R., Gutiérrez Jiménez, E., Ho, Y. C. L., Blicher, J., Madsen, S. M., Nagenthiraja, K., Dalby, R. B., Drasbek, K. R., Møller, A., Brændgaard, H., Mouridsen, K., Jespersen, S. N., Jensen, M. S. & West, M. J. (2013). The capillary dysfunction hypothesis of Alzheimer's disease. Neurobiology of Aging, 34(4), 1018-31. https://doi.org/10.1016/j.neurobiolaging.2012.09.011

Olesen, J. L., Ianus, A., Østergaard, L., Shemesh, N. & Jespersen, S. N. (2023). Tensor denoising of multidimensional MRI data. Magnetic Resonance in Medicine, 89(3), 1160-1172. https://doi.org/10.1002/mrm.29478

Olesen, J. L., Ianus, A., Østergaard, L., Shemesh, N. & Jespersen, S. (2022). Tensor denoising of high-dimensional MRI data.

Nunes, D., Cruz, T., Jespersen, S. N. & Shemesh, N. (2016). Susceptibility-Driven Oscillations in Multi-Gradient-Echo MRI Reflect Axonal Microstructures. Abstract from ISMRM 2016 Annual Meeting & Exhibition, Singapore, Singapore.

Dudele, A., Rasmussen, P. M. & Østergaard, L. (2020). Sural Nerve Perfusion in Mice. Frontiers in Neuroscience, 14, Article 579373. https://doi.org/10.3389/fnins.2020.579373

Khan, A. R., Chuhutin, A., Wiborg, O., Kroenke, C. D., Nyengaard, J. R., Hansen, B. & Jespersen, S. N. (2016). Summary of high field diffusion MRI and microscopy data demonstrate microstructural aberration in chronic mild stress rat brain. Data in Brief, 8, 934-937. https://doi.org/10.1016/j.dib.2016.06.061

Bay, V., Kjølby, B. F., Iversen, N. K., Mikkelsen, I. K., Ardalan, M., Nyengaard, J. R., Jespersen, S. N., Drasbek, K. R., Østergaard, L. & Hansen, B. (2018). Stroke infarct volume estimation in fixed tissue: Comparison of diffusion kurtosis imaging to diffusion weighted imaging and histology in a rodent MCAO model. PLOS ONE, 13(4), e0196161. Article e0196161. https://doi.org/10.1371/journal.pone.0196161

Joseph, J. V., Blaavand, M. S., Cai, H., Vernejoul, F., Knopper, R. W., Lindhardt, T. B., Skipper, K. A., Axelgaard, E., Reinert, L., Mikkelsen, J. G., Borghammer, P., Degn, S. E., Perouzel, E., Hager, H., Hansen, B., Kalucka, J. M., Vendelbo, M., Paludan, S. R. & Thomsen, M. K. (2023). STING activation counters glioblastoma by vascular alteration and immune surveillance. Cancer Letters, 579, Article 216480. https://doi.org/10.1016/j.canlet.2023.216480

Lynge Olesen, J. & Jespersen, S. (2020). Stick power law scaling in neurons withstands realistic curvature and branching. 0716. Abstract from International Society for Magnetic Resonance in Medicine Annual Meeting.

Rasmussen, P. M., Madsen, K. H., Strother, S. C. & Hansen, L. K. (2010). Sparseness in predictive models is associated with reduced pattern reproducibility. Poster session presented at 16th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, Spain.

Jespersen, S. N., Sokolov, I. M. & Blumen, A. (2000). Small-world rouse networks as models of cross-linked polymers. Journal of Chemical Physics, 113(17), 7652-7655.

Jespersen, S. N., Sokolov, I. M. & Blumen, A. (2001). Small world networks. Poster session presented at Networks in Physics 2001, Göttingen, Germany.

Sandgaard, A. D. & Jespersen, S. (2020). Sharper Images in Quantitative Susceptibility Mapping with Magnetometric Dipole Kernels. 3197. Abstract from International Society for Magnetic Resonance in Medicine Annual Meeting.

Sandgaard, A. D., Kiselev, V., Shemesh, N. & Jespersen, S. (2021). Rotation-Free Mapping of Magnetic Tissue Properties in White Matter. 3967. Abstract from 2021 International Society for Magnetic Resonance in Medicine annual meeting.

Jespersen, S. N., Lundell, H., Sønderby, C. & Dyrby, T. (2013). Rotationally invariant double pulsed field gradient diffusion imaging. Abstract from ISMRM 2013, Salt Lake City, United States.

Alves, R., Henriques, R. N., Jespersen, S. & Shemesh, N. (2021). Resolving the underlying sources of diffusion kurtosis in focal ischemia by Correlation Tensor MRI. 0403. Abstract from 2021 International Society for Magnetic Resonance in Medicine annual meeting.

Coelho, S., Pozo, J. M., Jespersen, S. N., Jones, D. K. & Frangi, A. F. (2019). Resolving degeneracy in diffusion MRI biophysical model parameter estimation using double diffusion encoding. Magnetic Resonance in Medicine, 82(1), 395-410. https://doi.org/10.1002/mrm.27714

Mouridsen, K., Hansen, M. B., Østergaard, L. & Jespersen, S. N. (2014). Reliable estimation of capillary transit time distributions using DSC-MRI. Journal of Cerebral Blood Flow and Metabolism, 34(9), 1511-21. https://doi.org/10.1038/jcbfm.2014.111

Mouridsen, K., Østergaard, L., Christensen, S. & Jespersen, S. N. (2011). Reliable estimation of capillary transit time distributions at voxel-level using DSC-MRI.

Jespersen, S. N., Sokolov, I. M. & Blumen, A. (2000). Relaxation properties of small-world networks. Physical Review E, 62(3), 4405-4408.

Johnsen, L., Friis, K. A., Ryø, L. B., Mikkelsen, J. G., Lindhardt, T. B., Knopper, R. W., Hansen, B., Praetorius, J. & Damkier, H. H. (2022). Regulation of Ncbe in the Choroid Plexus of Mice after Hemorrhage-Induced Hydrocephalus. The FASEB Journal, 36(S1). https://doi.org/10.1096/fasebj.2022.36.S1.R3405

Ardalan, M., Chumak, T., Quist, A., Hermans, E., H.Rafati, A., Gravina, G., Marziyeh Jabbari Shiadeh, S., Svedin, P., Alabaf, S., Hansen, B., Wegener, G., Westberg, L. & Mallard, C. (2022). Reelin cells and sex-dependent synaptopathology in autism following postnatal immune activation. British Journal of Pharmacology, 179(17), 4400-4422. https://doi.org/10.1111/bph.15859

Hansen, B. & Jespersen, S. (2017). Recent developments in fast kurtosis imaging. Frontiers in Physics, 5(SEP), Article 40. https://doi.org/10.3389/fphy.2017.00040

Doucette, J., Wei, L., Hernández-Torres, E., Kames, C., D. Forkert, N., Olesen, R. A., Lund, T. E., Hansen, B. & Rauscher, A. (2019). Rapid solution of the Bloch-Torrey equation in anisotropic tissue: Application to dynamic susceptibility contrast MRI of cerebral white matter. NeuroImage, 185, 198-207. https://doi.org/10.1016/j.neuroimage.2018.10.035

Vukovic, N., Hansen, B., Lund, T. E., Jespersen, S. & Shtyrov, Y. (2021). Rapid microstructural plasticity in the cortical semantic network following a short language learning session. PLoS Biology, 19(6), Article e3001290. https://doi.org/10.1371/journal.pbio.3001290

Novikov, D. S., Fieremans, E., Jespersen, S. N. & Kiselev, V. G. (2019). Quantifying brain microstructure with diffusion MRI: Theory and parameter estimation. NMR in Biomedicine, 32(4), Article e3998. https://doi.org/10.1002/nbm.3998

Novikov, D. S., Jespersen, S. N., Kiselev, V. G. & Fieremans, E. (2016). Quantifying brain microstructure with diffusion MRI: Theory and parameter estimation.

Olesen, J. L., Shemesh, N. & Jespersen, S. (2019). Propagation of Bias in Moment-Matching Based Standard Model Parameter Estimation. Abstract from International Society of Magnetic Resonance in Medicine 2019, Montreal, Quebec, Canada.

Frokjaer, V. G., Erritzoe, D., Holst, K. K., Jensen, P. S., Rasmussen, P. M., Fisher, P. M., Baaré, W., Madsen, K. S., Madsen, J., Svarer, C. & Knudsen, G. M. (2012). Prefrontal serotonin transporter availability is positively associated with the cortisol awakening response. European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology. https://doi.org/10.1016/j.euroneuro.2012.05.013

Sandgaard, A. D. & Jespersen, S. (2025). Predicting Mesoscopic Larmor Frequency Shifts in White Matter With Diffusion MRI—A Monte Carlo Study in Axonal Phantoms. NMR in Biomedicine, 38(3), Article e70004. https://doi.org/10.1002/nbm.70004

Chuhutin, A., Hansen, B. & Jespersen, S. N. (2017). Precision and accuracy of diffusion kurtosis estimation and the influence of b-value selection. NMR in Biomedicine, 30(11), Article e3777. https://doi.org/10.1002/nbm.3777

Olesen, J. L., Shemesh, N. & Jespersen, S. (2021). Power-law scaling of the diffusion signal in gray matter and the influence of exchange. 0643. Abstract from 2021 International Society for Magnetic Resonance in Medicine annual meeting.

Micklander, E., van den Berg, F., Thybo, A. K., Jespersen, S. & Stødkilde-Jørgensen, H. (2005). Potato texture: digging deep with magnetic resonance imaging and chemometrics. Poster session presented at Food Congress 2005 - from Molecule to Man, DTU, Denmark.

Jespersen, S. N., Oshanin, G. & Blumen, A. (2001). Polymer dynamics in time-dependent Matheron-de Marsily flows: An exactly solvable model. Physical Review E, 63(1), 6.

Churchill, N. W., Yourganov, G., Spring, R., Rasmussen, P. M., Lee, W., Ween, J. E. & Strother, S. C. (2012). PHYCAA: data-driven measurement and removal of physiological noise in BOLD fMRI. NeuroImage, 59(2), 1299-314. https://doi.org/10.1016/j.neuroimage.2011.08.021

Jespersen, S. N., Lundell, H., Sønderby, C. K. & Dyrby, T. B. (2013). Orientationally invariant metrics of apparent compartment eccentricity from double pulsed field gradient diffusion experiments. NMR in Biomedicine, 26, 1647-1662. https://doi.org/10.1002/nbm.2999

Coelho, S., Pozo, J. M., Jespersen, S., Frangi, A. F., Novikov, D. S. & Fieremans, E. (2020). Optimal experimental design in multidimensional diffusion MRI for parameter estimation of biophysical tissue models. 0731. Abstract from International Society for Magnetic Resonance in Medicine Annual Meeting.

Coelho, S., Pozo, J. M., Jespersen, S. N. & Frangi, A. F. (2019). Optimal Experimental Design for Biophysical Modelling in Multidimensional Diffusion MRI. In D. Shen, T. Liu, T. M. Peters, L. H. Staib, C. Essert, S. Zhou, P.-T. Yap & A. Khan (Eds.), Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings: Proceedings (Vol. III, pp. 617-625). Springer. https://doi.org/10.1007/978-3-030-32248-9_69

Vinding, M. S., Maximov, I., Tosner, Z., Jespersen, S. N. & Nielsen, N. C. (2011). Optimal Control Theory in Magnetic Resonance Imaging: Global Optima for 2DRF pulses. Poster session presented at 32nd Annual Danish NMR Meeting, Korsør, Denmark.

Blackband, S. J., Flint, J., Hansen, B., Shepherd, T. M., Heon-Lee, C., Streit, W. J. & Forder, J. (2020). On the Origins of Diffusion MRI Signal Changes in Stroke. Frontiers in Neurology, 11, Article 549. https://doi.org/10.3389/fneur.2020.00549

Novikov, D. S., Kiselev, V. & Jespersen, S. (2018). On modeling. Magnetic Resonance in Medicine, 79(6), 3172– 3193. https://doi.org/10.1002/mrm.27101

Haahr, M. E., Rasmussen, P. M., Madsen, K., Marner, L., Ratner, C. F., Gillings, N. M., Baaré, W. F. C. & Knudsen, G. M. (2012). Obesity is associated with high serotonin 4 receptor availability in the brain reward circuitry. NeuroImage, 61(4), 884-8. https://doi.org/10.1016/j.neuroimage.2012.03.050

Rasmussen, P. M., Abrahamsen, T. J., Madsen, K. H. & Hansen, L. K. (2012). Nonlinear denoising and analysis of neuroimages with kernel principal component analysis and pre-image estimation. NeuroImage, 60(3), 1807-18. https://doi.org/10.1016/j.neuroimage.2012.01.096

Simoes, R., Henriques, R. N., Cardoso, B., Fernandes, F., Olesen, J. L., Jespersen, S. & Shemesh, N. (2021). Non-invasive assessment of glycolytic and oxidative metabolism in mouse glioma using DGE 2H-MRS. 3718. Abstract from 2021 International Society for Magnetic Resonance in Medicine annual meeting.

Thybo, A., Jespersen, S., Lærke, P. E. & Stødkilde-Jørgensen, H. (2004). Non-destructive detection of internal bruise and spraing disease symptoms in potatoes using magnetic resonance imaging (MRI). Poster session presented at International Conference on Applications of Magnetic Resonance in Food Science, København.

Thybo, A. K., Jespersen, S., Laerke, P. E. & Stødkilde-Jørgensen, H. (2004). Nondestructive detection of internal bruise and spraing disease symptoms in potatoes using magnetic resonance imaging. Magn Reson Imaging, 22(9), 1311-1317.

Østergaard, L., Dreier, J. P., Hadjikhani, N., Jespersen, S. N., Dirnagl, U. & Dalkara, T. (2015). Neurovascular coupling during cortical spreading depolarization and -depression. Stroke; a journal of cerebral circulation, 46(5), 1392-401. https://doi.org/10.1161/STROKEAHA.114.008077

Alstrup, A. K. O., Hansen, B. & Winterdahl, M. (2013). Neuroimaging of white matter lesions and ischemia in Göttingen minipigs – a pilot study. Ellegaard Newsletter, 40, 8.

Skakkebæk, A., Gravholt, C. H., Rasmussen, P. M., Bojesen, A., Jensen, J. S., Fedder, J., Laurberg, P., Hertz, J. M., Østergaard, J. R., Pedersen, A. D. & Wallentin, M. (2014). Neuroanatomical correlates of Klinefelter syndrome studied in relation to the neuropsychological profile. NeuroImage: Clinical, 4, 1-9. https://doi.org/10.1016/j.nicl.2013.10.013

Jespersen, S. N., Bjarkam, C. R., Nyengaard, J. R., Mallar, C., Hansen, B., Vosegaard, T., Østergaard, L., Yablonskiy, DA., Nielsen, N. C. & Vestergaard-Poulsen, P. (2010). Neurite density from magnetic resonance diffusion measurements at ultrahigh field: comparison with light microscopy and electron microscopy. NeuroImage, 49(1), 205-16. https://doi.org/10.1016/j.neuroimage.2009.08.053

Hansen, B., Lund, T. E., Sangill, R. & Jespersen, S. N. (2015). Neurite density from an isotropic diffusion model.

Khan, A. R., Hansen, B., Danladi, J., Chuhutin, A., Wiborg, O., Nyengaard, J. R. & Jespersen, S. (2019). Neurite atrophy in dorsal hippocampus of rat indicates incomplete recovery of chronic mild stress induced depression: Neurite atrophy in the hippocampus show partial recovery of depression. NMR in Biomedicine, 32(3). https://doi.org/doi.org/10.1002/nbm.4057

Micklander, E., van den Berg, F., Thybo, A. K., Jespersen, S. & Stødkilde-Jørgensen, H. (2004). Multivirate chemometric analsyis of Magnetic Resoancne Images in relation to food quality. Poster session presented at Conference on Applicatio of Magnetic Resonance in Food Science, København, Denmark.

Hansen, B., Jespersen, S. N. & Vestergaard-Poulsen, P. (2008). MR-mikroskopi giver indblik i hjernens mikrostruktur. Poster session presented at Forskningens Dag 2008, Århus, Denmark.

Johannsen, K. M., Fuglsig, J. M. D. C. E. S., Hansen, B., Lund, T. E., Wenzel, A. & Spin-Neto, R. (2021). MRI image artefacts caused by orthodontic appliances and/or implant-supported dental prosthesis: a systematic review. Abstract from
23rd International Congress of DentoMaxilloFacial Radiology (ICDMFR), Korea, Republic of.

Fuglsig, J. M. D. C. E. S., Hansen, B., Schropp, L., Nixdorf, D. R., Wenzel, A. & Spin-Neto, R. (2021). MRI compared with CBCT for dental implant planning: a pilot, ex-vivo study on alveolar bone measurements. Abstract from 23rd International congress of dentomaxillofacial radiology, Korea, Republic of.

Fernandes, F. F., Olesen, J. L., Jespersen, S. N. & Shemesh, N. (2023). MP-PCA denoising of fMRI time-series data can lead to artificial activation “spreading”. NeuroImage, 273, Article 120118. https://doi.org/10.1016/j.neuroimage.2023.120118

Rasmussen, P. M., Hansen, L. K., Madsen, K. H., Churchill, N. W. & Strother, S. C. (2012). Model sparsity and brain pattern interpretation of classification models in neuroimaging. Pattern Recognition, 45(6), 2085-2100. https://doi.org/10.1016/j.patcog.2011.09.011

Rasmussen, P. M., Mørup, M., Hansen, L. K. & Arnfred, S. M. (2008). Model order estimation for independent component analysis of epoched EEG signals. In BIOSIGNALS 2008 - Proceedings of the 1st International Conference on Bio-inspired Systems and Signal Processing (Vol. 2, pp. 3-10)

Jespersen, S. N., Ashkanian, M., Mouridsen, K. & Østergaard, L. (2008). Modelling the regulation of cerebral oxygen extraction by flow heterogeneity. Poster session presented at Forskningens dag, Århus, Denmark.

Jespersen, S. N., Ashkanian, M., Mouridsen, K. & Østergaard, L. (2008). Modelling the regulation of cerebral oxygen extraction by flow heterogeneity. Abstract from International society of magnetic resonance in medicine, annual meeting 2008, Toronto, Canada.

Jespersen, S. N. (2008). Modellering af vanddiffusion i hjernen - et værktøj til måling af fibertæthed?. Poster session presented at Forskningens dag, Århus, Denmark.

Jespersen, S. N., Ashkanian, M., Mouridsen, K. & Østergaard, L. (2007). Modeling the regulation of cerebral oxygenextraction by flow heterogeneity. Abstract from Workshop on cerebral perfusion and brain function 2007, Salvador da Bahia, Brazil.

Angleys, H. & Østergaard, L. (2022). Modeling the measurement bias in interstitial glucose concentrations derived from microdialysis in skeletal muscle. Physiological Reports, 10(8), Article e15252. https://doi.org/10.14814/phy2.15252

Rasmussen, P. M., Secomb, T. W. & Pries, A. R. (2018). Modeling the hematocrit distribution in microcirculatory networks: A quantitative evaluation of a phase separation model: A quantitative evaluation of a phase separation model. Microcirculation, 25(3), Article 12445. https://doi.org/10.1111/micc.12445

Jespersen, S. N., Kroenke, CD., Østergaard, L., Ackerman, JJ. & Yablonskiy, DA. (2007). Modeling dendrite density from magnetic resonance diffusion measurements. NeuroImage, 34(4), 1473-1486. https://doi.org/10.1016/j.neuroimage.2006.10.037

Rasmussen, P. M., Smith, A. F., Sakadžić, S., Boas, D. A., Pries, A. R., Secomb, T. W. & Østergaard, L. (2017). Model-based inference from microvascular measurements: Combining experimental measurements and model predictions using a Bayesian probabilistic approach. Microcirculation, 24(4), Article e12343. https://doi.org/10.1111/micc.12343

Hansen, B. (2010). Mikroskopi med MR-skanneren. Aktuel Naturvidenskab, (4), 16-17.

Hasselholt, S., Cömert, C., Just, J., Bross, P., Nyengaard, J. R., Hansen, B. & Østergaard, L. (2024). Microvessel and mitochondria changes in a mouse model of Alzheimer’s disease. BIO Web of Conferences, 129, Article 16017. https://doi.org/10.1051/bioconf/202412916017

Næss-Schmidt, E. T., Blicher, J. U., Eskildsen, S. F., Tietze, A., Hansen, B., Stubbs, P. W., Jespersen, S., Østergaard, L. & Nielsen, J. F. (2017). Microstructural changes in the thalamus after mild traumatic brain injury: A longitudinal diffusion and mean kurtosis tensor MRI study. Brain Injury, 31(2), 230-236. https://doi.org/10.1080/02699052.2016.1229034

Næss-Schmidt, E. T., Udby Blicher, J., Møller Thastum, M., Rask, C. U., Wulff Svendsen, S., Schröder, A., Tuborgh, A. H., Østergaard, L., Sangill, R., Lund, T., Nørhøj Jespersen, S., Pedersen, A. R., Hansen, B., Eskildsen, S. F. & Nielsen, J. F. (2021). Microstructural changes in the brain after long-term post-concussion symptoms: A randomized trial. Journal of Neuroscience Research, 99(3), 872-886. https://doi.org/10.1002/jnr.24773

Vestergaard-Poulsen, P., Hansen, B., Østergaard, L. & Jakobsen, R. (2007). Microstructural changes in ischemic cortical gray matter predicted by a model of diffusion-weighted MRI. Journal of Magnetic Resonance Imaging, 26(3), 529-40. https://doi.org/10.1002/jmri.21030

Vestergaard-Poulsen, P., Hansen, B., Østergaard, L. & Jakobsen, R. (2007). Micro structural changes in ischemic cortical gray matter predicted by a model of diffusion weighted MRI. (26 ed.) (pp. 529-40). J. Magnetic Resonance Imaging.

Khan, A. R., Jespersen, S., Wiborg, O., Kroenke, C. & Hansen, B. (2018). Microstructural and Metabolic Recovery of Anhedonic Rat Brains: An In Vivo Diffusion MRI and 1H-MRS Approach. Data, 3(3), Article 29. https://doi.org/10.3390/data3030029

Henriques, R. N., Jespersen, S. N. & Shemesh, N. (2019). Microscopic anisotropy misestimation in spherical-mean single diffusion encoding MRI. Magnetic Resonance in Medicine, 81(5), 3245-3261. https://doi.org/10.1002/mrm.27606

Hansen, B. (2008). Micro-imaging: Magnetic Resonance Microscopy at very high fields: Report on the collaboration with McKnight Brain Institute, FL. In The Danish National Research Foundation’s Center of Functionally Integrative Neuroscience Annual Report 2007 (pp. 24-25)

Østergaard, L., Granfeldt, A., Secher, N., Tietze, A., Iversen, N. K., Jensen, M. S., Andersen, K. K., Nagenthiraja, K., Gutiérrez-Lizardi, P., Mouridsen, K., Jespersen, S. N. & Tønnesen, E. K. (2015). Microcirculatory dysfunction and tissue oxygenation in critical illness. Acta Anaesthesiologica Scandinavica, 59(10), 1246-59. https://doi.org/10.1111/aas.12581

Flint, J., Menon, K., Hansen, B., Forder, J. & Blackband, S. (2017). Metabolic Support of Excised, Living Brain Tissues During Magnetic Resonance Microscopy Acquisition. Journal of Visualized Experiments, 2017(128), Article e56282.

Henriques, R. N., Olesen, J. L., Jespersen, S. & Shemesh, N. (2020). Measuring the full diffusional intra- and inter-compartmental kurtosis tensors using double diffusion encoding. 0742. Abstract from International Society for Magnetic Resonance in Medicine Annual Meeting.

Tietze, A., Hansen, M. B., Østergaard, L., Jespersen, S. N., Sangill, R., Lund, T. E., Geneser, M., Hjelm, M. & Hansen, B. (2015). Mean Diffusional Kurtosis in Patients with Glioma: Initial Results with a Fast Imaging Method in a Clinical Setting. American Journal of Neuroradiology, 36(8), 1472-1478. https://doi.org/10.3174/ajnr.A4311

Rasmussen, P. M. (2012). Mathematical modeling and visualization of functional neuroimages. http://www.imm.dtu.dk/English/Service/Phonebook.aspx?lg=showcommon&id=00a832ae-d4f9-4c0b-a32f-6bb6b73ebb37

Hansen, B. & Vestergaard-Poulsen, P. (2006). Mapping the parameter-space of a T₂-dependent model of water diffusion MR in brain tissue. Magnetic Resonance Imaging, 24(8), 1031-1038. http://www.sciencedirect.com/science?_ob=MImg&_imagekey=B6T9D-4K5HWFF-1-9&_cdi=5112&_user=642076&_orig=browse&_coverDate=10%2F31%2F2006&_sk=999759991&view=c&wchp=dGLbVzb-zSkWb&md5=d0541d56b7c009ffdb0e78dc86882e78&ie=/sdarticle.pdf

Hansen, B. & Vestergaard-Poulsen, P. (2006). Mapping the Parameter Space of a T₂ Dependent Diffusion Model in Brain Tissue. Poster session presented at International Society of Magnetic Resonance, Miami, United States.

Hansen, B. & Vestergaard-Poulsen, P. (2005). Mapping the Parameter Space of a T₂ Dependent Diffusion Model in Brain Tissue. Poster session presented at Workshop on Diffusion (International Society of Magnetic Resonance), Lake Louise, Canada.

Hansen, B. & Vestergaard-Poulsen, P. (2006). Mapping the parameter space of a T2-dependent model of water diffusion MR in brain tissue. Magnetic Resonance Imaging, 24(8), 1031-8.

Hansen, B. (2005). Mapping theParameter-space of a T2 Dependent Model of Diffusion Processes in Brain Tissue. In Proceedings of the ISMRM 13th Scientific Meeting andExhibition ISMRM.

Hansen, B. (2006). Mapping the Parameter-space of a T2 Dependent Model of Diffusion Processesin Brain Tissue. Poster session presented at ISMRM Workshop on Methods for Quantitative Diffusion MRI of Human Brain, Lake Louise, Canada.

Nunes, D., Cruz, T. L., Jespersen, S. N. & Shemesh, N. (2017). Mapping axonal density and average diameter using non-monotonic time-dependent gradient-echo MRI. Journal of Magnetic Resonance, 277, 117. https://doi.org/10.1016/j.jmr.2017.02.017

Nunes, D., Cruz, T. L., Jespersen, S. & Shemesh, N. (2016). Mapping axonal density and average diameter using non-monotonic time-dependent gradient-echo MRI. ArXiv.

Lindhardt, T. B., Gutiérrez-Jiménez, E., Liang, Z. & Hansen, B. (2022). Male and Female C57BL/6 Mice Respond Differently to Awake Magnetic Resonance Imaging Habituation. Frontiers in Neuroscience, 16, Article 853527. https://doi.org/10.3389/fnins.2022.853527

Flint, J. J., Hansen, B., Lee, C. H. & Blackband, S. J. (2008). Magnetic Resonance Microscopy of the Rat CNS Using Prototype Surface Microcoils. In Proceedings of the 49th ENC

Flint, J., Hansen, B., Lee, C. H., Fey, M., Schmidig, D., Vestergaard-Poulsen, P. & Blackband, S. J. (2010). Magnetic Resonance Microscopy of the CA1 Region in Rat Hippocampus.

Flint, J. J., Lee, C. H., Hansen, B., Fey, M., Schmidig, D., Bui, J. D., King, M. A., Vestergaard-Poulsen, P. & Blackband, S. J. (2009). Magnetic resonance microscopy of mammalian neurons. NeuroImage, 46(4), 1037-40. https://doi.org/10.1016/j.neuroimage.2009.03.009

Flint, JJ., Lee, C., Hansen, B., Fey, M., Schmidig, D., Bui, JD., King, M., Vestergaard-Poulsen, P. & Blackband, S. J. (2009). Magnetic resonance microscopy of mammalian neurons. Abstract from ISMRM, Honolulu, United States.

Flint, J., Hansen, B., Portnoy, S., Lee, C.-H., King, M. A., Fey, M., Vincent, F., Stanisz, G. J., Vestergaard-Poulsen, P. & Blackband, S. (2012). Magnetic Resonance Microscopy of Human and Porcine Neurons and Cellular Processes. NeuroImage, 60(2).

Flint, J., Hansen, B., Portnoy, S., Lee, C.-H., King, M. A., Fey, M., Schmidig, D., Vestergaard-Poulsen, P. & Blackband, S. (2011). Magnetic Resonance Microscopy of Human alpha-Motor Neurons and Cellular Processes.

Johannsen, K. M., Fuglsig, J. M. D. C. E. S., Hansen, B., Matzen, L. H. & Spin-Neto, R. (2022). Magnetic resonance imaging in the diagnosis of periapical and periodontal disease: systematic review. Abstract from 18th European Congress of Dentomaxillofacial Radiology.

de Carvalho E Silva Fuglsig, J. M., Wenzel, A., Hansen, B., Lund, T. E. & Spin-Neto, R. (2021). Magnetic Resonance Imaging for the Planning, Execution, and Follow-up of Implant-Based Oral Rehabilitation: Systematic Review. International Journal of Oral & Maxillofacial Implants, 36(3), 432-441. https://doi.org/10.11607/jomi.8536

Fuglsig, J. M. D. C. E. S., Hansen, B., Schropp, L., Nixdorf, D. R., Wenzel, A. & Spin-Neto, R. (2022). Magnetic resonance imaging compared to cone beam computed tomography for jawbone measurements.

Johannsen, K. M., de Carvalho E Silva Fuglsig, J. M., Hansen, B., Wenzel, A. & Spin-Neto, R. (2023). Magnetic resonance imaging artefacts caused by orthodontic appliances and/or implant-supported prosthesis: a systematic review. Oral Radiology, 39(2), 394-407. https://doi.org/10.1007/s11282-022-00652-9

Alstrup, A. K. O., Munk, O. L., Jensen, T. H., Jensen, L. F., Hedayat, A. & Hansen, B. (2017). Magnetic resonance imaging and computed tomography as tools for the investigation of sperm whale (Physeter macrocephalus) teeth and eye. Acta Veterinaria Scandinavica , 59(1), 1-8. Article 38. https://doi.org/10.1186/s13028-017-0307-y

Khan, A. R., Hansen, B., Iversen, N. K., Olesen, J. L., Angoa-Perez, M., M. Kuhn, D., Østergaard, L. & Jespersen, S. (2019). Longitudinal, multiparametric MRI of repetitive mild traumatic brain injury in rats. 53-54. Abstract from Neuroscience Day 2019, Aarhus, Denmark.

Khan, A. R., Hansen, B., Iversen, N. K., Angoa-Perez, M., Kuhn, D. & Jespersen, S. (2018). Longitudinal metabolic alterations in the cerebral cortex of rats after repetitive mild traumatic brain injury. 1.

Knopper, R. W. & Hansen, B. (2023). Locus coeruleus and the defensive activation theory of rapid eye movement sleep: A mechanistic perspective. Frontiers in Neuroscience, 17, Article 1094812. https://doi.org/10.3389/fnins.2023.1094812

Bertin Markussen, N., Knopper, R. W., Hasselholt, S., Stald Skoven, C., Nyengaard, J. R., Østergaard, L. & Hansen, B. (2023). Locus Coeruleus ablation in mice: protocol optimization, stereology and behavioral impact. Frontiers in Cellular Neuroscience, 17, Article 1138624. https://doi.org/10.3389/fncel.2023.1138624

Aamand, R., Rasmussen, P. M., Weitzberg, E., Christiansen, M., Lund, T. E. & Østergaard, L. (2019). Local and global microvascular disturbances in the brains of APOE-ɛ4 carriers: Vascular and cognitive responses to nitrate supplementation. Journal of Cerebral Blood Flow and Metabolism, 39(1_suppl), Article PB02-O12. https://doi.org/10.1177/0271678X19851020

Jespersen, S. N., Metzler, R. & Fogedby, H. (1999). Levy Flights in External Force Fields: Langevin and Fractional Fokker-Planck Equations. Physical Review E, 59, 2736-2745.

Jespersen, S. N. & Fogedby, H. (1999). Levy Flights. Poster session presented at Dansk Fysisk Selskab 1999, Nyborg, Denmark.

Sandgaard, A. D., Shemesh, N., Kiselev, V. G. & Jespersen, S. N. (2023). Larmor frequency shift from magnetized cylinders with arbitrary orientation distribution. NMR in Biomedicine, 36(3), Article e4859. https://doi.org/10.1002/nbm.4859

Hansen, B. & Jespersen, S. N. (2016). Kurtosis fractional anisotropy: its contrast and estimation by proxy. Scientific Reports, 6(23999), Article 23999.

Angleys, H. & Østergaard, L. (2020). Krogh's capillary recruitment hypothesis, 100 years on: Is the opening of previously closed capillaries necessary to ensure muscle oxygenation during exercise? A J P: Heart and Circulatory Physiology (Online), 318(2), H425-H447. https://doi.org/10.1152/ajpheart.00384.2019

Fuglsig, J. M. D. C. E. S., Schropp, L., Hansen, B., Wenzel, A. & Spin-Neto, R. (2024). Jawbone measurements of edentulous sites related to implant planning using magnetic resonance imaging compared to cone beam computed tomography: An ex vivo study. Clinical Oral Implants Research, 35(2), 179-186. https://doi.org/10.1111/clr.14211

Hansen, B. (2023). Jagten på biomarkører. In Hjernen og psyken (pp. 45-55). HjerneForum.

Jespersen, S. N. (2025). Isotropic sampling of tensor-encoded diffusion MRI. Magnetic Resonance in Medicine, 93(5), 2040-2048. https://doi.org/10.1002/mrm.30404

Erritzoe, D., Frokjaer, V. G., Holst, K. K., Christoffersen, M., Johansen, S. S., Svarer, C., Madsen, J., Rasmussen, P. M., Ramsøy, T., Jernigan, T. L. & Knudsen, G. M. (2011). In vivo imaging of cerebral serotonin transporter and serotonin(2A) receptor binding in 3,4-methylenedioxymethamphetamine (MDMA or "ecstasy") and hallucinogen users. Archives of general psychiatry, 68(6), 562-76. https://doi.org/10.1001/archgenpsychiatry.2011.56

Lee, C. H., Flint, J., Hansen, B. & Blackband, S. (2015). Investigation of the subcellular architecture of L7 neurons of Aplysia californica using magnetic resonance microscopy (MRM) at 7.8 microns. Scientific Reports.

Hansen, B., Flint, J., Lee, C.-H., Fey, M., Vincent, F., King, M. A., Vestergaard-Poulsen, P. & Blackband, S. (2011). Investigation of the diffusion tensor's primary eigenvector correspondence to tissue structure in MR microscopy of the human spinal cord with direct comparison to histology..

Hochreuter, K., Buti, G., Ajdari, A., Bridge, C. P., Sharp, G. C., Jespersen, S., Lukacova, S., Bortfeld, T. & Kallehauge, J. F. (2025). Investigating the potential of diffusion tensor atlases to generate anisotropic clinical tumor volumes in glioblastoma patients. Physics and Imaging in Radiation Oncology, 33, Article 100688. https://doi.org/10.1016/j.phro.2024.100688

Chen, G., Jespersen, S., Pedersen, M., Qi, P., Horsman, M. R. & Stødkilde-Jørgensen, H. (2005). Intravenous administration of Gd-DTPA prior to DWI does not affect the apparent diffusion constant. Magn Reson Imaging, 23(5), 685-689. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Citation&list_uids=16051044

Henriques, R. N., Jespersen, S. & Shemesh, N. (2021). Intra-compartmental kurtosis biases tensor-valued multidimensional diffusion. 2463. Abstract from 2021 International Society for Magnetic Resonance in Medicine annual meeting. https://www.ismrm.org/21/program-files/TeaserSlides/TeasersPresentations/2463-Teaser.html

Johannsen, K. R. D., Christensen, J. H., Matzen, L. H., Hansen, B. & Spin-Neto, R. (2025). Interference of titanium and zirconia implants on dental-dedicated MR image quality: ex vivo and in vivo assessment. Dentomaxillofacial Radiology, 54(2), 132-139. https://doi.org/10.1093/dmfr/twae071

Spin-Neto, R., Johannsen, K. R. D., Christensen, J. H., Matzen, L. H. & Hansen, B. (2024). Interference of titanium and zirconia implants on dental-dedicated magnetic resonance image quality: ex vivo and in vivo assessment. Abstract from 19th European Congress of DentoMaxilloFacial Radiology, Freiburg, Germany.

Eskildsen, S. F., Gyldensted, L., Nagenthiraja, K., Nielsen, R. B., Hansen, M. B., Dalby, R. B., Frandsen, J., Rodell, A., Gyldensted, C., Jespersen, S. N., Lund, T. E., Mouridsen, K., Brændgaard, H. & Østergaard, L. (2017). Increased cortical capillary transit time heterogeneity in Alzheimer’s disease: a DSC-MRI perfusion study. Neurobiology of Aging, 50, 107-118. https://doi.org/10.1016/j.neurobiolaging.2016.11.004

Eskildsen, S. F., Gyldensted, L., Nagenthiraja, K., Frandsen, J., Rodell, A., Gyldensted, C., Jespersen, S. N., Mouridsen, K., Brændgaard, H. & Østergaard, L. (2013). Increased cerebral oxygen extraction capacity in patients with Alzheimer’s disease. Abstract from Alzheimer's Association International Conference, Boston, United States. https://doi.org/10.1016/j.jalz.2013.05.173

Sandgaard, A. D., Kiselev, V. G., Henriques, R. N., Shemesh, N. & Jespersen, S. N. (2024). Incorporating the effect of white matter microstructure in the estimation of magnetic susceptibility in ex vivo mouse brain. Magnetic Resonance in Medicine, 91(2), 699-715. https://doi.org/10.1002/mrm.29867

Sandgaard, A. D., Shemesh, N., Kiselev, V. G. & Jespersen, S. (2023). Incorporating susceptibility effects into the Standard Model of diffusion in white matter. Abstract from Gordon Research Conference on Tissue Microstructure
Imaging, Easton, Massachusetts, United States.

Sandgaard, A. D., Shemesh, N., Kiselev, V. G. & Jespersen, S. (2023). Incorporating susceptibility effects into the standard model of diffusion in white matter. 0975. Abstract from ISMRM & ISMRT Annual Meeting & Exhibition, Toronto, Ontario, Canada.

Sandgaard, A. D., Kiselev, V. G., Shemesh, N. & Jespersen, S. (2022). Incorporating Orientation-Dependent Susceptibility Effects in the Standard Model of Diffusion in White Matter. Abstract from ISMRM Workshop on Diffusion MRI
, Amsterdam, Netherlands.

Sandgaard, A. D., Kiselev, V. G., Shemesh, N. & Jespersen, S. (2023). Including mesoscopic frequency shifts from fibrous structure of white matter improves accuracy of QSM. 4177. Abstract from ISMRM & ISMRT Annual Meeting & Exhibition, Toronto, Ontario, Canada.

Hansen, B. & Vestergaard-Poulsen, P. (2006). Improving Geometry in Models of Diffusion Weighted MRI in Brain Tissue. Poster session presented at International Symposium on Biomedical Magnetic Resonance Imaging and Spectroscopy at Very High Fields, Würzburg, Germany.

Jespersen, S., Olesen, J. L., Ianus, A. & Shemesh, N. (2018). Implications of nongaussian diffusion on the interpretation of multidimensional diffusion measurements. Proceedings of the International Society for Magnetic Resonance in Medicine, 26.

Bertin, N., Knopper, R. W. & Hansen, B. (2022). Hjernens blå prik - centrum for hjernens sundhed? Aktuel Naturvidenskab, 2022(1), 36-41.

Østergaard, L., Bjarkam, C. R., Kringelbach, M. L., Hansen, B., Wallentin, M., Vuust, P., Schjødt, U., Petersen, M. B., Drasbek, K. R. & Lindeløv, J. K. (2013). Hjernen- fra celle til samfund. Systime Academic.

Hansen, B. (2007). Hjernealderens komme? Anmeldelse af Lone Franks "Den Femte Revolution". Kvant, (4), 25-25.

Hansen, B. (2007). Hjernealderens komme? Anmeldelse af Lone Franks "Den Femte Revolution - fortællinger fra hjernens tidsalder". Kvant, (4).

Anzabi, M., Ardalan, M., Iversen, N. K., H. Rafati, A., Hansen, B. & Østergaard, L. (2018). Hippocampal Atrophy Following Subarachnoid Hemorrhage Correlates with Disruption of Astrocyte Morphology and Capillary Coverage by AQP4. Frontiers in Cellular Neuroscience, 12(19), Article 19.

Thaler, C., Kyselyova, A. A., Faizy, T. D., Nawka, M. T., Jespersen, S., Hansen, B., Stellmann, J.-P., Heesen, C., Stürner, K. H., Stark, M., Fiehler, J., Bester, M. & Gellißen, S. (2021). Heterogeneity of multiple sclerosis lesions in fast diffusional kurtosis imaging. PLOS ONE, 16(2), Article e0245844. https://doi.org/10.1371/journal.pone.0245844

Mikkelsen, S. H., Wied, B., Dashkovskyi, V., Lindhardt, T. B., Hirschler, L., Warnking, J. M., Barbier, E. L., Postnov, D., Hansen, B. & Gutiérrez-Jiménez, E. (2022). Head holder and cranial window design for sequential magnetic resonance imaging and optical imaging in awake mice. Frontiers in Neuroscience, 16, Article 926828. https://doi.org/10.3389/fnins.2022.926828

Hansen, B. (2013). Fysikken bag MR-skanning af hjernen. In H. Blæsild Vuust (Ed.), Hjernen - fra celle til samfund (pp. 60-76). Forlaget Systime.

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Khan, A. R., Hansen, B., Iversen, N. K., Olesen, J. L., Angoa-Perez, M., M. Kuhn, D. & Jespersen, S. (2019). Functional and microstructural alterations in the rat hippocampus after repetitive mild traumatic brain injury. Abstract from International Society of Magnetic Resonance in Medicine 2019, Montreal, Quebec, Canada.

Frokjaer, V. G., Erritzoe, D., Jensen, P., Rasmussen, P. M., Holst, K. K., Madsen, J., Baare, W. & Knudsen, G. M. (2011). Frontal cortex serotonin transporter binding is positively associated with basal physiological stress reactivity in healthy volunteers. European Neuropsychopharmacology, 21(Suppl. 1), S74.

Hansen, B., Shemesh, N. & Jespersen, S. N. (2016). Fast imaging of mean, axial and radial diffusion kurtosis. NeuroImage, 142, 381. https://doi.org/10.1016/j.neuroimage.2016.08.022

Kjølby, B. F., Khan, A. R., Chuhutin, A., Pedersen, L. H., Jensen, J. B., Jakobsen, S., Zeidler, D., Sangill, R., Nyengaard, J. R., Jespersen, S. N. & Hansen, B. (2016). Fast diffusion kurtosis imaging of fibrotic mouse kidneys. NMR in Biomedicine, 29(12), 1709.

Khan, A. R., Hansen, B., Wiborg, O., Kroenke, C. & Jespersen, S. (2018). Ex-vivo diffusion MRI reveals microstructural alterations in stress-sensitive brain regions: A chronic mild stress recovery study. Abstract from Joint ISMRM and ESMRMB conference, Paris, Paris, France.

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Henriette Blæsild Vuust